C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: troponin C type 1 (slow)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000496590 TNNC1-002 ENSG00000114854 9606 - 3:52451415-52452834 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyOvaryENST00000496590
Transcript ID Kidney Ovary
ENST00000496590 0.092±0.00 1.884±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WP CIL_0007WP_0001 VISTA 3:52127966-52731115

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000169169 Tnnc1-001 protein_coding Mus_musculus 0 547
ENSMUST00000170268 Tnnc1-003 nonsense_mediated_decay Mus_musculus 0 412
ENSMUST00000161399 Tnnc1-002 retained_intron Mus_musculus 0 411

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