C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: troponin C, cardiac/slow skeletal
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000169169 Tnnc1-001 ENSMUSG00000091898 10090 + 14:31208312-31211729 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000169169
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000169169 0.192±0.08 0.289±0.17 1.031±0.02 6.277±6.01 1.519±0.05 0.423±0.09 2506.205±373.29 3.112±2.02 14.141±10.65 20.678±1.42 206.960±130.69 0.924±0.37 18.263±18.71 0.397±0.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WP CIL_0007WP_0002 VISTA 14:30932335-31535522
CIL_00002S CIL_00002S_0002 CGP 14:31139013-31216946

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002086 IEA diaphragm contraction
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005739 IEA mitochondrion
GO:0005861 IEA troponin complex
GO:0006937 IEA regulation of muscle contraction
GO:0010038 IEA response to metal ion
GO:0015629 IEA actin cytoskeleton
GO:0031013 IEA troponin I binding
GO:0031014 IEA troponin T binding
GO:0032972 IMP regulation of muscle filament sliding speed
GO:0042803 IEA protein homodimerization activity
GO:0043292 IEA contractile fiber
GO:0043462 IDA regulation of ATPase activity
GO:0048306 IEA calcium-dependent protein binding
GO:0051015 IDA actin filament binding
GO:0055010 IEA ventricular cardiac muscle tissue morphogenesis
GO:0060048 IEA cardiac muscle contraction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000232975 TNNC1-001 protein_coding Homo_sapiens 0 706
ENST00000461086 TNNC1-004 retained_intron Homo_sapiens 0 268
ENST00000496590 TNNC1-002 protein_coding Homo_sapiens 0 547

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