C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L7 pseudogene 47
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000497299 RPL7P47-001 ENSG00000228071 9606 + 16:17932720-17933275 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000497299
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000497299 0.291±0.00 0.302±0.00 0.127±0.00 0.274±0.15 0.817±0.00 0.089±0.00 0.178±0.00 0.091±0.05 0.208±0.00 0.389±0.00 0.599±0.72 0.582±0.69 0.271±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008RL CIL_0008RL_0001 VISTA 16:17351247-17952556
CIL_0008RM CIL_0008RM_0001 VISTA 16:17846504-18447239

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000058437 Rpl7-001 protein_coding Mus_musculus 0 608
ENSMUST00000027054 Gm5045-201 processed_pseudogene Mus_musculus 0 603
ENSMUST00000119853 Gm12174-001 processed_pseudogene Mus_musculus 0 597
ENSMUST00000118173 Gm6274-001 processed_pseudogene Mus_musculus 0 575
ENSMUST00000141217 Rpl7-002 retained_intron Mus_musculus 0 503
ENSMUST00000122189 Gm5392-001 processed_pseudogene Mus_musculus 0 496
ENSMUST00000118692 Gm12090-001 processed_pseudogene Mus_musculus 0 473
ENSMUST00000148424 1700073E17Rik-001 transcribed_processed_pseudogene Mus_musculus 0 418
ENSMUST00000152419 1700073E17Rik-002 processed_transcript Mus_musculus 0 418
ENSMUST00000117062 Gm15159-001 processed_pseudogene Mus_musculus 0 411
ENSMUST00000151017 Rpl7-005 retained_intron Mus_musculus 0 244
ENSMUST00000140597 Rpl7-006 processed_transcript Mus_musculus 0 244

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