C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: mitochondrial tRNA translation optimization 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000498286 MTO1-001 ENSG00000135297 9606 + 6:73461578-73509236 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonHeartKidneyLiverLungMuscleOvaryENST00000498286
Transcript ID Brain Colon Heart Kidney Liver Lung Muscle Ovary
ENST00000498286 0.452±0.00 0.240±0.00 0.257±0.00 0.421±0.12 0.282±0.01 0.323±0.00 0.167±0.00 0.276±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006PO CIL_0006PO_0001 CGP 6:73461578-73523797

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002098 IEA tRNA wobble uridine modification
GO:0005739 IEA mitochondrion
GO:0008033 IEA tRNA processing
GO:0044822 IDA poly(A) RNA binding
GO:0050660 IEA flavin adenine dinucleotide binding
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034896 Mto1-001 protein_coding Mus_musculus 0 2025
ENSMUST00000148238 Mto1-007 nonsense_mediated_decay Mus_musculus 0 1219
ENSMUST00000150850 Mto1-002 retained_intron Mus_musculus 0 414
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.0000000005 73
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.00002 58

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