C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GS homeobox 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000503800 GSX2-002 ENSG00000180613 9606 + 4:54100173-54102227 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainTestisENST00000503800
Transcript ID Brain Testis
ENST00000503800 0.103±0.00 0.161±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001CS CIL_0001CS_0001 CGP 4:52872982-54295272
CIL_0001CL CIL_0001CL_0001 CGP 4:53377643-54295272
CIL_0007R1 CIL_0007R1_0001 VISTA 4:53715055-54316288
CIL_0008IT CIL_0008IT_0001 VISTA 4:53795831-54396629
CIL_0001CN CIL_0001CN_0001 CGP 4:54009789-54102505
CIL_0001CO CIL_0001CO_0001 CGP 4:54099523-54298247

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000160104 Gsx2-002 protein_coding Mus_musculus 0 717
ENSMUST00000040477 Gsx2-001 protein_coding Mus_musculus 0 399
ENSDART00000080466 hoxa3a-009 protein_coding Danio_rerio 0.000006 57

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