C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | survival of motor neuron 1, telomeric | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000506239  |
SMN1-003 |
ENSG00000172062 |
9606 | + |
5:70925075-70953016  |
nonsense_mediated_decay |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0004ZD | CIL_0004ZD_0001 | CGP | 5:70900665-70953942 |
| CIL_0004ZC | CIL_0004ZC_0001 | CGP | 5:70925030-71025114 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0003723 | IEA | RNA binding |
| GO:0005634 | IEA | nucleus |
| GO:0005737 | IEA | cytoplasm |
| GO:0006397 | IEA | mRNA processing |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000022147
|
Smn1-001 | protein_coding | Mus_musculus | 0 | 754 |
|
ENSMUST00000143937
|
Smn1-008 | protein_coding | Mus_musculus | 0 | 381 |
|
ENSMUST00000134514
|
Smn1-002 | retained_intron | Mus_musculus | 0 | 283 |
|
ENSMUST00000140745
|
Smn1-006 | nonsense_mediated_decay | Mus_musculus | 0 | 250 |
|
ENSMUST00000125572
|
Smn1-007 | retained_intron | Mus_musculus | 2.94273e-44 | 183 |
|
ENSDART00000127956
|
smn1-201 | protein_coding | Danio_rerio | 2e-17 | 95 |
|
ENSDART00000028099
|
smn1-001 | protein_coding | Danio_rerio | 2e-17 | 95 |
