C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: H2A histone family, member Y
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000506671 H2AFY-006 ENSG00000113648 9606 - 5:135334473-135399238 nonsense_mediated_decay

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00083J CIL_00083J_0001 VISTA 5:135133909-135736454

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000786 IEA nucleosome
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0046982 IEA protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000045788 H2afy-002 protein_coding Mus_musculus 0 719
ENSMUST00000016081 H2afy-001 protein_coding Mus_musculus 0 719
ENSMUST00000139511 H2afy-003 processed_transcript Mus_musculus 0 643
ENSMUST00000141031 H2afy-004 retained_intron Mus_musculus 0 610
ENSMUST00000137835 H2afy-008 retained_intron Mus_musculus 0 582
ENSMUST00000154778 H2afy-005 processed_transcript Mus_musculus 0 453
ENSMUST00000154564 H2afy-006 processed_transcript Mus_musculus 0 433
ENSMUST00000141589 H2afy-007 retained_intron Mus_musculus 0 399

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