C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sorting nexin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000506847 SNX2-009 ENSG00000205302 9606 + 5:122816923-122829773 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonKidneyLiverLungMuscleTestisENST00000506847
Transcript ID Adrenal Brain Colon Kidney Liver Lung Muscle Testis
ENST00000506847 12.080±0.00 2.670±0.00 8.191±0.00 10.159±0.00 4.072±0.00 9.655±0.00 9.211±0.00 12.674±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005KK CIL_0005KK_0002 CGP 5:122311354-122830108
CIL_0004B0 CIL_0004B0_0001 CGP 5:122774996-123029354

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000037850 Snx2-201 protein_coding Mus_musculus 0 856
ENSMUST00000120410 Gm12543-001 transcribed_processed_pseudogene Mus_musculus 0 516
ENSMUST00000123665 Snx30-004 processed_transcript Mus_musculus 0 235

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