C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleoporin 54kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000507257 NUP54-002 ENSG00000138750 9606 - 4:76114659-76148416 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonKidneyLiverMuscleENST00000507257
Transcript ID Bladder Brain Breast Colon Kidney Liver Muscle
ENST00000507257 0.621±0.00 1.436±0.56 1.939±0.00 1.699±0.00 2.855±0.00 1.160±0.00 1.523±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008VL CIL_0008VL_0001 VISTA 4:76031495-76631676
CIL_00071G CIL_00071G_0001 CGP 4:76114659-76213893

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005643 IEA nuclear pore

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000038514 Nup54-001 protein_coding Mus_musculus 0 643
ENSMUST00000161109 Gm15790-001 processed_pseudogene Mus_musculus 0 638
ENSMUST00000123694 Nup54-007 retained_intron Mus_musculus 0 451

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