C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted pseudogene 15790
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000161109 Gm15790-001 ENSMUSG00000089648 10090 - 1:129796608-129797858 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainHeartKidneyLiverOvaryPlacentaTestisENSMUST00000161109
Transcript ID Adipose Adrenal Bladder Brain Heart Kidney Liver Ovary Placenta Testis
ENSMUST00000161109 0.163±0.00 0.209±0.05 0.051±0.00 0.035±0.00 0.127±0.00 0.049±0.01 0.043±0.04 0.197±0.06 0.028±0.00 0.068±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006VZ CIL_0006VZ_0002 CGP 1:128588199-130219278
CIL_0007SW CIL_0007SW_0002 VISTA 1:129654812-130256885

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264883 NUP54-001 protein_coding Homo_sapiens 0 1423
ENST00000502850 NUP54-003 nonsense_mediated_decay Homo_sapiens 0 948
ENST00000507257 NUP54-002 nonsense_mediated_decay Homo_sapiens 0 638
ENST00000508465 NUP54-017 processed_transcript Homo_sapiens 0 339
ENST00000508604 NUP54-006 retained_intron Homo_sapiens 0 399
ENST00000512151 NUP54-005 nonsense_mediated_decay Homo_sapiens 0 1171
ENST00000514313 NUP54-015 retained_intron Homo_sapiens 0 361
ENST00000514987 NUP54-004 protein_coding Homo_sapiens 0 1399
ENST00000515460 NUP54-008 processed_transcript Homo_sapiens 0 475

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