C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleoporin 54kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000508465 NUP54-017 ENSG00000138750 9606 - 4:76115104-76130701 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartLiverLungENST00000508465
Transcript ID Adipose Adrenal Breast Colon Heart Liver Lung
ENST00000508465 5.335±0.00 8.937±0.00 5.657±0.00 5.122±0.00 1.929±0.00 2.171±0.00 2.247±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008VL CIL_0008VL_0001 VISTA 4:76031495-76631676
CIL_00071G CIL_00071G_0001 CGP 4:76114659-76213893

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000038514 Nup54-001 protein_coding Mus_musculus 0 353
ENSMUST00000161109 Gm15790-001 processed_pseudogene Mus_musculus 0 339
ENSMUST00000123694 Nup54-007 retained_intron Mus_musculus 0 291

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