C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 4 (sodium bicarbonate cotransporter), member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000512686 SLC4A4-004 ENSG00000080493 9606 + 4:71339053-71473319 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderOvaryENST00000512686
Transcript ID Bladder Ovary
ENST00000512686 24.305±0.00 0.057±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000D8 CIL_0000D8_0001 CGP 4:70992538-71572087
CIL_0000D9 CIL_0000D9_0001 CGP 4:71187286-71804041

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0005452 IEA inorganic anion exchanger activity
GO:0005515 IPI protein binding
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0006810 TAS:IEA transport
GO:0006811 TAS ion transport
GO:0006820 IEA anion transport
GO:0008509 IEA anion transmembrane transporter activity
GO:0008510 IMP sodium:bicarbonate symporter activity
GO:0015701 TAS bicarbonate transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016323 IDA basolateral plasma membrane
GO:0035725 IMP sodium ion transmembrane transport
GO:0055085 TAS transmembrane transport
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000130041 Slc4a4-003 protein_coding Mus_musculus 0 2344
ENSMUST00000156238 Slc4a4-002 protein_coding Mus_musculus 0 2117
ENSMUST00000148750 Slc4a4-001 protein_coding Mus_musculus 0 2117
ENSMUST00000113218 Slc4a4-007 protein_coding Mus_musculus 0 1925
ENSMUST00000134303 Slc4a4-008 protein_coding Mus_musculus 0 830
ENSMUST00000113216 Slc4a4-004 protein_coding Mus_musculus 0 597

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