C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphoglucomutase 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000513973 PGM3-001 ENSG00000013375 9606 - 6:83164873-83193293 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000513973
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000513973 2.803±0.00 2.454±0.00 3.252±0.00 3.113±0.00 2.403±0.36 1.244±0.58 1.937±0.45 5.262±0.00 2.013±0.00 1.049±0.00 4.483±0.82 4.379±1.24 5.861±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000673 CIL_000673_0001 CGP 6:82892398-83171350
CIL_000672 CIL_000672_0001 CGP 6:83067666-83193936
CIL_000671 CIL_000671_0001 CGP 6:83161150-83198932

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000287 IEA magnesium ion binding
GO:0004610 IDA:IEA phosphoacetylglucosamine mutase activity
GO:0005575 ND cellular_component
GO:0005829 IBA cytosol
GO:0005975 IEA carbohydrate metabolic process
GO:0006041 NAS glucosamine metabolic process
GO:0006048 IBA UDP-N-acetylglucosamine biosynthetic process
GO:0006487 IMP protein N-linked glycosylation
GO:0006488 TAS dolichol-linked oligosaccharide biosynthetic process
GO:0006493 IMP protein O-linked glycosylation
GO:0016868 IEA intramolecular transferase activity, phosphotransferases
GO:0018279 TAS protein N-linked glycosylation via asparagine
GO:0030097 IBA hemopoiesis
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000070064 Pgm3-001 protein_coding Mus_musculus 0 1620
ENSMUST00000186193 Pgm3-004 retained_intron Mus_musculus 0 1507
ENSMUST00000187251 Pgm3-002 retained_intron Mus_musculus 0 1314
ENSMUST00000072585 Pgm3-003 protein_coding Mus_musculus 0 1173
ENSMUST00000034987 Dopey1-201 protein_coding Mus_musculus 0 475
ENSMUST00000187427 Dopey1-018 retained_intron Mus_musculus 0 475
ENSMUST00000189817 Dopey1-013 nonsense_mediated_decay Mus_musculus 0 475
ENSMUST00000185919 Dopey1-005 nonsense_mediated_decay Mus_musculus 0 475
ENSMUST00000190957 Dopey1-004 protein_coding Mus_musculus 0 475
ENSMUST00000189564 Dopey1-014 retained_intron Mus_musculus 0 470
ENSMUST00000183046 Smchd1-006 retained_intron Mus_musculus 0.000000000002 81

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