C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sorting nexin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000514030 SNX2-008 ENSG00000205302 9606 + 5:122817275-122827752 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonKidneyLiverLungMuscleENST00000514030
Transcript ID Brain Breast Colon Kidney Liver Lung Muscle
ENST00000514030 7.773±0.00 4.677±0.00 2.583±0.00 5.369±0.00 8.861±0.00 9.183±0.00 1.868±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005KK CIL_0005KK_0002 CGP 5:122311354-122830108
CIL_0004B0 CIL_0004B0_0001 CGP 5:122774996-123029354

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000037850 Snx2-201 protein_coding Mus_musculus 0 782
ENSMUST00000120410 Gm12543-001 transcribed_processed_pseudogene Mus_musculus 0 632
ENSMUST00000123665 Snx30-004 processed_transcript Mus_musculus 0 351

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