C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GC-rich promoter binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000514387 GPBP1-005 ENSG00000062194 9606 + 5:57174049-57263587 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000514387
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000514387 3.347±0.00 4.370±0.00 2.243±0.00 4.923±2.03 4.296±0.00 3.056±0.00 3.174±0.00 3.174±2.37 1.318±0.00 5.395±0.00 2.510±0.00 5.174±2.03 2.548±0.89 10.245±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089Y CIL_00089Y_0001 VISTA 5:57082966-57684027

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane
GO:0006351 IEA transcription, DNA-templated
GO:0043231 IDA intracellular membrane-bounded organelle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000091236 Gpbp1-001 protein_coding Mus_musculus 0 2643
ENSMUST00000047627 Gpbp1-002 protein_coding Mus_musculus 0 2218
ENSMUST00000136471 Gpbp1-003 nonsense_mediated_decay Mus_musculus 0 1975
ENSMUST00000156221 Gpbp1-005 processed_transcript Mus_musculus 0 538
ENSMUST00000129638 Gpbp1-004 retained_intron Mus_musculus 0 536
ENSMUST00000143331 Gpbp1-006 processed_transcript Mus_musculus 0 435

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