C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000514888 PAICS-002 ENSG00000128050 9606 + 4:56435741-56461361 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonHeartKidneyLiverOvaryPlacentaENST00000514888
Transcript ID Bladder Brain Colon Heart Kidney Liver Ovary Placenta
ENST00000514888 1.730±0.00 5.741±0.00 5.417±0.00 2.873±0.00 6.476±0.00 0.383±0.00 8.033±5.63 4.962±0.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001WN CIL_0001WN_0001 CGP 4:56393362-56461368
CIL_0008G9 CIL_0008G9_0001 VISTA 4:56396035-56999166
CIL_0001WO CIL_0001WO_0001 CGP 4:56435741-56503680

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004639 IEA phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
GO:0005524 IEA ATP binding
GO:0006189 IEA 'de novo' IMP biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000117536 Paics-002 protein_coding Mus_musculus 0 1526
ENSMUST00000120912 Paics-001 protein_coding Mus_musculus 0 1526
ENSMUST00000031160 Paics-003 protein_coding Mus_musculus 0 1526
ENSMUST00000153648 Paics-005 nonsense_mediated_decay Mus_musculus 0 651
ENSMUST00000140051 Paics-006 retained_intron Mus_musculus 3e-32 145

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