C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000517330 CTD-2179L22.1-001 ENSG00000253558 9606 - 5:78041879-78044138 transcribed_processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; MuscleENST00000517330
Transcript ID Muscle
ENST00000517330 0.183±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00091B CIL_00091B_0001 VISTA 5:77543897-78144918
CIL_0007SL CIL_0007SL_0001 VISTA 5:77545919-78149307
CIL_00091C CIL_00091C_0001 VISTA 5:77551756-78152775
CIL_00091D CIL_00091D_0001 VISTA 5:77671560-78273382
CIL_0007OX CIL_0007OX_0002 UCNEbase 5:77741346-78218792

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000024739 Hsp90ab1-001 protein_coding Mus_musculus 0 412
ENSMUST00000166469 Hsp90ab1-006 protein_coding Mus_musculus 0 322
ENSMUST00000119727 Gm6368-001 processed_pseudogene Mus_musculus 0 211
ENSMUST00000119159 Gm13498-001 processed_pseudogene Mus_musculus 0 207
ENSMUST00000145205 Hsp90ab1-005 retained_intron Mus_musculus 5e-39 167

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