C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heat shock protein 90 alpha (cytosolic), class B member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000024739 Hsp90ab1-001 ENSMUSG00000023944 10090 - 17:45567775-45573271 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000024739
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000024739 263.849±103.46 188.466±22.19 319.167±37.24 360.235±69.70 187.179±11.18 144.916±9.15 240.883±16.08 171.925±9.75 253.660±122.99 178.667±25.33 282.723±6.09 421.190±267.39 753.463±588.95 80.389±45.94

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008DS CIL_0008DS_0002 VISTA 17:45025360-45628753

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001890 IMP placenta development
GO:0002134 IEA UTP binding
GO:0002135 IEA CTP binding
GO:0003725 ISO double-stranded RNA binding
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005525 IEA GTP binding
GO:0005622 IDA intracellular
GO:0005737 IDA cytoplasm
GO:0005739 IDA mitochondrion
GO:0005829 IEA cytosol
GO:0006457 IEA protein folding
GO:0008180 IEA COP9 signalosome
GO:0009651 IEA response to salt stress
GO:0009986 IEA cell surface
GO:0016020 IEA membrane
GO:0016234 IEA inclusion body
GO:0016323 IEA basolateral plasma membrane
GO:0016324 IEA apical plasma membrane
GO:0017098 IEA sulfonylurea receptor binding
GO:0019901 IEA protein kinase binding
GO:0023026 IEA MHC class II protein complex binding
GO:0030235 ISS nitric-oxide synthase regulator activity
GO:0030911 ISS TPR domain binding
GO:0031526 IEA brush border membrane
GO:0032092 IEA positive regulation of protein binding
GO:0032435 IEA negative regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0032564 IEA dATP binding
GO:0033160 IEA positive regulation of protein import into nucleus, translocation
GO:0043524 IEA negative regulation of neuron apoptotic process
GO:0044325 IEA ion channel binding
GO:0044822 IEA poly(A) RNA binding
GO:0045429 ISS positive regulation of nitric oxide biosynthetic process
GO:0045793 IEA positive regulation of cell size
GO:0051082 IEA unfolded protein binding
GO:0060334 IEA regulation of interferon-gamma-mediated signaling pathway
GO:0060338 IEA regulation of type I interferon-mediated signaling pathway
GO:0070062 IEA extracellular vesicular exosome
GO:0071353 IDA cellular response to interleukin-4
GO:0071407 IEA cellular response to organic cyclic compound
GO:0071902 IEA positive regulation of protein serine/threonine kinase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000020084 hsp90ab1-001 protein_coding Danio_rerio 0 1725
ENSDART00000023550 hsp90aa1.2-001 protein_coding Danio_rerio 0 1314
ENSDART00000129014 hsp90ab1-201 protein_coding Danio_rerio 0 1186
ENST00000353801 HSP90AB1-004 protein_coding Homo_sapiens 0 2778
ENST00000371554 HSP90AB1-005 protein_coding Homo_sapiens 0 2776
ENST00000371646 HSP90AB1-003 protein_coding Homo_sapiens 0 2784
ENST00000426420 HSP90AB6P-001 processed_pseudogene Homo_sapiens 0 1613
ENST00000447112 RP11-759L5.2-001 processed_pseudogene Homo_sapiens 0 821
ENST00000450068 HSP90AB7P-001 processed_pseudogene Homo_sapiens 0 560
ENST00000468766 RP11-781E19.1-001 processed_pseudogene Homo_sapiens 0 625
ENST00000505987 HSP90AB3P-001 processed_pseudogene Homo_sapiens 0 2628
ENST00000507090 HSP90AB2P-002 transcribed_processed_pseudogene Homo_sapiens 0 2263
ENST00000517330 CTD-2179L22.1-001 transcribed_processed_pseudogene Homo_sapiens 0 412
ENST00000523204 AP3B1-006 processed_transcript Homo_sapiens 0 191
ENST00000602906 HSP90AB2P-001 processed_transcript Homo_sapiens 0 466
ENST00000620073 HSP90AB1-201 protein_coding Homo_sapiens 0 2778

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