C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: ribosomal RNA adenine dimethylase domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000517871 RRNAD1-013 ENSG00000143303 9606 + 1:156732252-156733649 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; LungENST00000517871
Transcript ID Lung
ENST00000517871 3.846±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008JO CIL_0008JO_0001 VISTA 1:156202708-156805613
CIL_000850 CIL_000850_0001 VISTA 1:156360457-156965492
CIL_0000CW CIL_0000CW_0002 CGP 1:156721891-156736960

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000164439 Rrnad1-012 nonsense_mediated_decay Mus_musculus 0 392
ENSMUST00000160143 Rrnad1-010 protein_coding Mus_musculus 0 392
ENSMUST00000159831 Rrnad1-002 retained_intron Mus_musculus 0 392
ENSMUST00000160074 Rrnad1-006 protein_coding Mus_musculus 0 392
ENSMUST00000005016 Rrnad1-001 protein_coding Mus_musculus 0 392
ENSMUST00000159091 Rrnad1-004 retained_intron Mus_musculus 0 392
ENSMUST00000160648 Rrnad1-003 nonsense_mediated_decay Mus_musculus 0 392
ENSMUST00000161014 Rrnad1-005 retained_intron Mus_musculus 0 252
ENSMUST00000168070 Rrnad1-011 retained_intron Mus_musculus 0 252
ENSMUST00000161471 Rrnad1-007 processed_transcript Mus_musculus 1.99993e-41 172

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