C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000517992 SNTB1-002 ENSG00000172164 9606 - 8:120538521-120812143 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryPlacentaTestisENST00000517992
Transcript ID Ovary Placenta Testis
ENST00000517992 9.976±0.00 2.199±0.00 2.664±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00008U CIL_00008U_0002 CGP 8:120380761-120542133
CIL_0002GD CIL_0002GD_0002 CGP 8:120445400-120813273
CIL_0002EA CIL_0002EA_0002 CGP 8:120535745-121641390

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005515 IPI:IEA protein binding
GO:0005516 IEA calmodulin binding
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005925 IDA focal adhesion
GO:0006936 TAS muscle contraction
GO:0016010 TAS dystrophin-associated glycoprotein complex
GO:0043234 IDA protein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000039769 Sntb1-001 protein_coding Mus_musculus 0 2259
ENSMUST00000110200 Sntb1-002 protein_coding Mus_musculus 0 1038
ENSMUST00000140574 Sntb1-003 processed_transcript Mus_musculus 0 623

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