C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: early B-cell factor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000520164 EBF2-001 ENSG00000221818 9606 - 8:25841730-26045397 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000520164
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000520164 4.795±0.00 3.968±0.00 0.260±0.00 0.027±0.01 2.409±1.81 0.968±0.48 1.738±0.77 0.435±0.00 1.762±0.00 0.117±0.03 0.924±0.35 0.165±0.05 0.052±0.03 1.221±0.73

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007UM CIL_0007UM_0001 VISTA 8:25617644-26219153

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001709 IEA cell fate determination
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0035563 IEA positive regulation of chromatin binding
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding
GO:0046983 IEA protein dimerization activity
GO:0050873 IEA brown fat cell differentiation
GO:0060612 IEA adipose tissue development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000176161 Ebf2-003 protein_coding Mus_musculus 0 3134
ENSMUST00000022637 Ebf2-001 protein_coding Mus_musculus 0 3125
ENSMUST00000176029 Ebf2-004 protein_coding Mus_musculus 0 3116
ENSDART00000085381 ebf3-001 protein_coding Danio_rerio 0 688
ENSMUST00000177231 Ebf2-002 retained_intron Mus_musculus 0 274

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