C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000520978 RUNX1T1-043 ENSG00000079102 9606 - 8:91970771-92005174 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyOvaryTestisENST00000520978
Transcript ID Kidney Ovary Testis
ENST00000520978 0.303±0.00 2.157±0.00 2.612±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008R4 CIL_0008R4_0001 VISTA 8:91512531-92114390
CIL_00084U CIL_00084U_0001 VISTA 8:91718140-92321117
CIL_0007WO CIL_0007WO_0001 VISTA 8:91718683-92321023
CIL_0009B0 CIL_0009B0_0001 VISTA 8:91758469-92361167
CIL_0007O2 CIL_0007O2_0001 UCNEbase 8:91812903-93072504

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000105566 Runx1t1-201 protein_coding Mus_musculus 0 1038
ENSMUST00000098256 Runx1t1-004 protein_coding Mus_musculus 0 1038
ENSMUST00000098257 Runx1t1-003 protein_coding Mus_musculus 0 1038
ENSMUST00000006761 Runx1t1-001 protein_coding Mus_musculus 0 1038
ENSDART00000010294 runx1t1-201 protein_coding Danio_rerio 0 353
ENSDART00000147226 runx1t1-001 protein_coding Danio_rerio 0 353

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