C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000079102 RUNX1T1 9606 - 8:91954967-92103286 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000265814 RUNX1T1-201 91954967-92099688 protein_coding
  ENST00000360348 RUNX1T1-009 91959787-92095215 protein_coding
  ENST00000396218 RUNX1T1-002 91958924-92062963 protein_coding
  ENST00000422361 RUNX1T1-004 91959793-92017637 protein_coding
  ENST00000436581 RUNX1T1-202 91954967-92095654 protein_coding
  ENST00000517493 RUNX1T1-026 92017263-92095472 processed_transcript
  ENST00000517792 RUNX1T1-038 92011088-92071387 protein_coding
  ENST00000517919 RUNX1T1-019 92014641-92095637 protein_coding
  ENST00000518256 RUNX1T1-037 92017304-92095229 processed_transcript
  ENST00000518317 RUNX1T1-033 92014757-92095235 protein_coding
  ENST00000518361 RUNX1T1-045 91986917-92005160 nonsense_mediated_decay
  ENST00000518449 RUNX1T1-030 92062624-92095261 protein_coding
  ENST00000518823 RUNX1T1-029 92014728-92095416 protein_coding
  ENST00000518832 RUNX1T1-012 92014798-92103286 protein_coding
  ENST00000518844 RUNX1T1-010 91960242-92095613 protein_coding
  ENST00000518954 RUNX1T1-028 92017290-92095443 protein_coding
  ENST00000518992 RUNX1T1-042 92005168-92095230 protein_coding
  ENST00000519061 RUNX1T1-023 92017293-92095482 protein_coding
  ENST00000519422 RUNX1T1-022 92014766-92095482 nonsense_mediated_decay
  ENST00000519577 RUNX1T1-015 92014725-92102907 nonsense_mediated_decay
  ENST00000519847 RUNX1T1-018 92011053-92095654 protein_coding
  ENST00000520047 RUNX1T1-007 91991671-92006768 retained_intron
  ENST00000520172 RUNX1T1-036 92017248-92095230 processed_transcript
  ENST00000520428 RUNX1T1-034 92017307-92095228 protein_coding
  ENST00000520556 RUNX1T1-041 92014661-92095235 protein_coding
  ENST00000520583 RUNX1T1-025 92014686-92095478 protein_coding
  ENST00000520724 RUNX1T1-011 91960131-92095611 protein_coding
  ENST00000520974 RUNX1T1-020 92014792-92095510 protein_coding
  ENST00000520978 RUNX1T1-043 91970771-92005174 nonsense_mediated_decay
  ENST00000521054 RUNX1T1-040 92005231-92019175 protein_coding
  ENST00000521078 RUNX1T1-044 91960240-91971160 retained_intron
  ENST00000521319 RUNX1T1-032 92014670-92095236 protein_coding
  ENST00000521375 RUNX1T1-031 92014766-92095257 protein_coding
  ENST00000521553 RUNX1T1-006 92004422-92017363 protein_coding
  ENST00000521733 RUNX1T1-039 92014661-92063623 protein_coding
  ENST00000521751 RUNX1T1-008 91960441-91991728 nonsense_mediated_decay
  ENST00000521897 RUNX1T1-027 92014747-92095450 nonsense_mediated_decay
  ENST00000521902 RUNX1T1-024 92017346-92095478 processed_transcript
  ENST00000522065 RUNX1T1-035 92017266-92095230 processed_transcript
  ENST00000522163 RUNX1T1-003 92017346-92095235 processed_transcript
  ENST00000522316 RUNX1T1-013 92005166-92103228 processed_transcript
  ENST00000522467 RUNX1T1-017 92014579-92099656 protein_coding
  ENST00000522860 RUNX1T1-021 92017400-92095484 processed_transcript
  ENST00000523168 RUNX1T1-016 92014688-92099688 protein_coding
  ENST00000523290 RUNX1T1-005 92009646-92095262 retained_intron
  ENST00000523629 RUNX1T1-001 91954975-92103226 protein_coding
  ENST00000524215 RUNX1T1-014 92014788-92102913 nonsense_mediated_decay
  ENST00000613302 RUNX1T1-203 91954967-92095654 protein_coding
  ENST00000613886 RUNX1T1-204 91954967-92095262 protein_coding
  ENST00000614812 RUNX1T1-205 91954967-92095654 protein_coding
  ENST00000615601 RUNX1T1-206 91954967-92103226 protein_coding
  ENST00000617740 RUNX1T1-207 91954967-92095654 protein_coding

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Gene structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000360348ENST00000396218ENST00000422361ENST00000436581ENST00000520724ENST00000520978ENST00000521078ENST00000523290ENST00000523629ENST00000613302ENST00000615601ENST00000617740
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000360348 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.544±0.00 N/A
ENST00000396218 N/A N/A 1.325±0.00 N/A N/A N/A 0.050±0.00 N/A N/A N/A N/A 1.580±0.00 0.769±0.00
ENST00000422361 N/A N/A N/A N/A 1.076±0.00 N/A N/A N/A 1.499±0.00 N/A N/A N/A N/A
ENST00000436581 N/A 0.336±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520724 N/A N/A N/A N/A N/A N/A 0.146±0.00 N/A N/A N/A 0.309±0.00 2.451±0.00 2.214±0.00
ENST00000520978 N/A N/A N/A N/A N/A N/A 0.303±0.00 N/A N/A N/A 2.157±0.00 N/A 2.612±0.00
ENST00000521078 N/A N/A N/A N/A N/A N/A 0.507±0.00 N/A N/A 0.534±0.00 N/A N/A N/A
ENST00000523290 N/A N/A N/A N/A N/A 1.951±0.00 0.188±0.00 N/A N/A N/A N/A N/A N/A
ENST00000523629 N/A 0.394±0.00 0.719±0.18 N/A 0.377±0.00 0.237±0.00 N/A N/A 0.229±0.00 N/A 0.980±0.79 N/A 0.848±0.32
ENST00000613302 N/A N/A N/A N/A 0.334±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000615601 0.330±0.00 N/A N/A 1.534±0.00 0.468±0.00 N/A N/A 0.046±0.00 0.926±0.00 0.597±0.00 0.364±0.00 0.523±0.00 1.732±0.00
ENST00000617740 N/A N/A N/A 0.813±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008R4 CIL_0008R4_0001 VISTA 8:91512531-92114390
CIL_00084U CIL_00084U_0001 VISTA 8:91718140-92321117
CIL_0007WO CIL_0007WO_0001 VISTA 8:91718683-92321023
CIL_0009B0 CIL_0009B0_0001 VISTA 8:91758469-92361167
CIL_0007O2 CIL_0007O2_0001 UCNEbase 8:91812903-93072504

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006091 TAS generation of precursor metabolites and energy
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0016363 IDA nuclear matrix
GO:0042802 IPI identical protein binding
GO:0042803 IEA protein homodimerization activity
GO:0045444 IEA fat cell differentiation
GO:0046872 IEA metal ion binding
GO:0051101 IEA regulation of DNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000003680 runx1t1 runt-related transcription factor 1; translocated to, 1 (cyclin D-related) protein_coding Danio_rerio
ENSMUSG00000006586 Runx1t1 runt-related transcription factor 1; translocated to, 1 (cyclin D-related) protein_coding Mus_musculus

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