C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000098256 Runx1t1-004 ENSMUSG00000006586 10090 + 4:13784782-13891117 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000098256
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000098256 1.438±0.19 0.179±0.07 2.984±0.00 0.826±0.42 0.220±0.06 0.409±0.11 0.290±0.06 1.118±0.69 0.649±0.24 1.362±0.44 0.257±0.04 0.368±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007O2 CIL_0007O2_0004 UCNEbase 4:12306673-14026114
CIL_00015G CIL_00015G_0002 CGP 4:12906838-13893649
CIL_0009B0 CIL_0009B0_0002 VISTA 4:13486474-14089660
CIL_0007WO CIL_0007WO_0002 VISTA 4:13531422-14134010
CIL_00084U CIL_00084U_0002 VISTA 4:13531423-14134052
CIL_0008R4 CIL_0008R4_0002 VISTA 4:13724600-14326426

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0010977 ISS negative regulation of neuron projection development
GO:0017053 ISS transcriptional repressor complex
GO:0042803 IPI protein homodimerization activity
GO:0045444 IDA fat cell differentiation
GO:0046872 IEA metal ion binding
GO:0051101 IDA regulation of DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000147226 runx1t1-001 protein_coding Danio_rerio 0 1120
ENSDART00000010294 runx1t1-201 protein_coding Danio_rerio 0 1118
ENST00000265814 RUNX1T1-201 protein_coding Homo_sapiens 0 3522
ENST00000268679 CBFA2T3-001 protein_coding Homo_sapiens 0 584
ENST00000327483 CBFA2T3-002 protein_coding Homo_sapiens 0 586
ENST00000360348 RUNX1T1-009 protein_coding Homo_sapiens 0 3072
ENST00000396218 RUNX1T1-002 protein_coding Homo_sapiens 0 3927
ENST00000422361 RUNX1T1-004 protein_coding Homo_sapiens 0 3068
ENST00000436581 RUNX1T1-202 protein_coding Homo_sapiens 0 3522
ENST00000517493 RUNX1T1-026 processed_transcript Homo_sapiens 0 315
ENST00000517792 RUNX1T1-038 protein_coding Homo_sapiens 0 518
ENST00000517919 RUNX1T1-019 protein_coding Homo_sapiens 0 424
ENST00000518256 RUNX1T1-037 processed_transcript Homo_sapiens 3e-20 102
ENST00000518317 RUNX1T1-033 protein_coding Homo_sapiens 0 429
ENST00000518361 RUNX1T1-045 nonsense_mediated_decay Homo_sapiens 0 532
ENST00000518449 RUNX1T1-030 protein_coding Homo_sapiens 4e-24 115
ENST00000518823 RUNX1T1-029 protein_coding Homo_sapiens 0 351
ENST00000518832 RUNX1T1-012 protein_coding Homo_sapiens 0 224
ENST00000518844 RUNX1T1-010 protein_coding Homo_sapiens 0 2477
ENST00000518954 RUNX1T1-028 protein_coding Homo_sapiens 3e-26 122
ENST00000518992 RUNX1T1-042 protein_coding Homo_sapiens 0 856
ENST00000519061 RUNX1T1-023 protein_coding Homo_sapiens 0 279
ENST00000519422 RUNX1T1-022 nonsense_mediated_decay Homo_sapiens 0 259
ENST00000519577 RUNX1T1-015 nonsense_mediated_decay Homo_sapiens 0 298
ENST00000519847 RUNX1T1-018 protein_coding Homo_sapiens 0 577
ENST00000520047 RUNX1T1-007 retained_intron Homo_sapiens 0 669
ENST00000520172 RUNX1T1-036 processed_transcript Homo_sapiens 0 230
ENST00000520428 RUNX1T1-034 protein_coding Homo_sapiens 4e-19 99
ENST00000520556 RUNX1T1-041 protein_coding Homo_sapiens 0 394
ENST00000520583 RUNX1T1-025 protein_coding Homo_sapiens 0 359
ENST00000520724 RUNX1T1-011 protein_coding Homo_sapiens 0 2547
ENST00000520974 RUNX1T1-020 protein_coding Homo_sapiens 0 226
ENST00000520978 RUNX1T1-043 nonsense_mediated_decay Homo_sapiens 0 1038
ENST00000521054 RUNX1T1-040 protein_coding Homo_sapiens 0 761
ENST00000521078 RUNX1T1-044 retained_intron Homo_sapiens 0 542
ENST00000521319 RUNX1T1-032 protein_coding Homo_sapiens 0 387
ENST00000521375 RUNX1T1-031 protein_coding Homo_sapiens 0 259
ENST00000521553 RUNX1T1-006 protein_coding Homo_sapiens 0 944
ENST00000521733 RUNX1T1-039 protein_coding Homo_sapiens 0 553
ENST00000521751 RUNX1T1-008 nonsense_mediated_decay Homo_sapiens 0 545
ENST00000521897 RUNX1T1-027 nonsense_mediated_decay Homo_sapiens 0 278
ENST00000522065 RUNX1T1-035 processed_transcript Homo_sapiens 1e-34 150
ENST00000522163 RUNX1T1-003 processed_transcript Homo_sapiens 5e-39 165
ENST00000522316 RUNX1T1-013 processed_transcript Homo_sapiens 0 195
ENST00000522467 RUNX1T1-017 protein_coding Homo_sapiens 0 510
ENST00000523168 RUNX1T1-016 protein_coding Homo_sapiens 0 359
ENST00000523290 RUNX1T1-005 retained_intron Homo_sapiens 0 667
ENST00000523629 RUNX1T1-001 protein_coding Homo_sapiens 0 3522
ENST00000524215 RUNX1T1-014 nonsense_mediated_decay Homo_sapiens 0 388
ENST00000569464 CBFA2T3-006 protein_coding Homo_sapiens 0 322
ENST00000613302 RUNX1T1-203 protein_coding Homo_sapiens 0 3522
ENST00000613886 RUNX1T1-204 protein_coding Homo_sapiens 0 3681
ENST00000614812 RUNX1T1-205 protein_coding Homo_sapiens 0 3522
ENST00000615601 RUNX1T1-206 protein_coding Homo_sapiens 0 3520
ENST00000617740 RUNX1T1-207 protein_coding Homo_sapiens 0 3522

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