C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000522888 RP11-546B8.5-001 ENSG00000254012 9606 + 5:171366299-171366611 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalColonHeartKidneyLiverMuscleOvaryENST00000522888
Transcript ID Adipose Adrenal Colon Heart Kidney Liver Muscle Ovary
ENST00000522888 0.056±0.00 0.179±0.00 0.057±0.00 0.051±0.00 0.061±0.00 0.157±0.00 0.198±0.00 0.218±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00088M CIL_00088M_0001 VISTA 5:170856489-171457417
CIL_00097F CIL_00097F_0001 VISTA 5:170900986-171503014
CIL_00092S CIL_00092S_0001 VISTA 5:171022159-171623481

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000119438 Rpl10-ps1-001 transcribed_processed_pseudogene Mus_musculus 0 381
ENSMUST00000074085 Rpl10-002 protein_coding Mus_musculus 0 381
ENSMUST00000008826 Rpl10-001 protein_coding Mus_musculus 0 381
ENSMUST00000076364 Rpl10-ps3-201 protein_coding Mus_musculus 0 381
ENSMUST00000121321 Rpl10-ps6-001 processed_pseudogene Mus_musculus 0 375
ENSMUST00000121144 Gm11450-001 processed_pseudogene Mus_musculus 0 353
ENSMUST00000187303 RP23-435I22.2-001 processed_pseudogene Mus_musculus 0 348
ENSMUST00000076465 Gm5621-201 processed_pseudogene Mus_musculus 0 348
ENSMUST00000151702 Rpl10-003 protein_coding Mus_musculus 0 344
ENSMUST00000075377 Gm6564-201 processed_pseudogene Mus_musculus 0 305
ENSMUST00000117120 Rpl10-ps4-001 processed_pseudogene Mus_musculus 0 246
ENSMUST00000135690 Rpl10-011 protein_coding Mus_musculus 7.9874e-44 180
ENSMUST00000134330 Rpl10-009 retained_intron Mus_musculus 3e-38 161

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