C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SUB1 pseudogene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000524415 SUB1P1-001 ENSG00000227203 9606 + 8:11790005-11790386 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyMuscleOvaryTestisENST00000524415
Transcript ID Adrenal Brain Breast Colon Heart Kidney Muscle Ovary Testis
ENST00000524415 0.169±0.00 0.562±0.00 0.263±0.00 0.092±0.00 0.094±0.00 0.034±0.00 0.031±0.00 0.397±0.23 0.164±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Y4 CIL_0008Y4_0001 VISTA 8:11271783-11873892
CIL_000919 CIL_000919_0001 VISTA 8:11446673-12047186
CIL_0007PQ CIL_0007PQ_0001 VISTA 8:11649159-12249913

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000110504 Sub1-002 protein_coding Mus_musculus 0 401
ENSMUST00000022816 Sub1-001 protein_coding Mus_musculus 0 401
ENSMUST00000121603 Gm2986-001 processed_pseudogene Mus_musculus 0 339
ENSMUST00000120656 Gm14620-001 processed_pseudogene Mus_musculus 0 327
ENSMUST00000134414 Sub1-003 processed_transcript Mus_musculus 0 322
ENSMUST00000129533 Sub1-004 retained_intron Mus_musculus 0 322

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