C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000524851 RPS3-022 ENSG00000149273 9606 + 11:75399543-75404994 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderOvaryPlacentaTestisENST00000524851
Transcript ID Bladder Ovary Placenta Testis
ENST00000524851 8.947±0.00 901.244±565.66 407.612±102.68 139.758±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008NG CIL_0008NG_0001 VISTA 11:75253021-75855707

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000737 IEA DNA catabolic process, endonucleolytic
GO:0002181 IBA cytoplasmic translation
GO:0003684 IDA damaged DNA binding
GO:0003723 IEA RNA binding
GO:0003729 IDA mRNA binding
GO:0003735 IEA:IDA structural constituent of ribosome
GO:0003906 IDA DNA-(apurinic or apyrimidinic site) lyase activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 IDA cytosol
GO:0005840 IEA ribosome
GO:0005925 IDA focal adhesion
GO:0006412 IEA:NAS translation
GO:0006413 NAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0006974 IEP cellular response to DNA damage stimulus
GO:0010467 TAS gene expression
GO:0015935 IEA small ribosomal subunit
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0019899 IPI enzyme binding
GO:0019901 IPI protein kinase binding
GO:0022627 IDA cytosolic small ribosomal subunit
GO:0030529 IDA ribonucleoprotein complex
GO:0032587 IDA ruffle membrane
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0045738 IMP negative regulation of DNA repair
GO:0051018 IPI protein kinase A binding
GO:0051059 IPI NF-kappaB binding
GO:0051092 IMP positive regulation of NF-kappaB transcription factor activity
GO:0051536 NAS iron-sulfur cluster binding
GO:0070062 IDA extracellular vesicular exosome
GO:0071159 IDA NF-kappaB complex
GO:1902546 IDA positive regulation of DNA N-glycosylase activity
GO:2001235 IDA positive regulation of apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000032998 Rps3-001 protein_coding Mus_musculus 0 976
ENSMUST00000107096 Rps3-003 protein_coding Mus_musculus 0 676
ENSMUST00000128174 Rps3-004 retained_intron Mus_musculus 0 462
ENSMUST00000128725 Rps3-002 retained_intron Mus_musculus 0 442

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