C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAD51 recombinase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000525066 RAD51-004 ENSG00000051180 9606 + 15:40695187-40731557 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryPlacentaENST00000525066
Transcript ID Ovary Placenta
ENST00000525066 2.784±0.00 2.904±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005IO CIL_0005IO_0002 CGP 15:40694774-40755851

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003677 IEA DNA binding
GO:0005524 IEA ATP binding
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0006200 IEA ATP catabolic process
GO:0006259 IEA DNA metabolic process
GO:0006281 IEA DNA repair
GO:0008094 IEA DNA-dependent ATPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028795 Rad51-001 protein_coding Mus_musculus 0 671
ENSMUST00000152327 Rad51-003 nonsense_mediated_decay Mus_musculus 0 601
ENSMUST00000110828 Rad51-004 retained_intron Mus_musculus 0 601
ENSMUST00000151406 Rad51-008 protein_coding Mus_musculus 0 477
ENSMUST00000140939 Rad51-005 protein_coding Mus_musculus 0 318
ENSMUST00000154683 Rad51-007 retained_intron Mus_musculus 0 315
ENSMUST00000141389 Rad51-006 retained_intron Mus_musculus 0 233
ENSMUST00000143934 Rad51-002 retained_intron Mus_musculus 0 195

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