C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | brain-derived neurotrophic factor | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000525950  |
BDNF-001 |
ENSG00000176697 |
9606 | - |
11:27654893-27720779  |
protein_coding |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_00078E | CIL_00078E_0002 | CGP | 11:27494576-27722058 |
| CIL_0004RP | CIL_0004RP_0002 | CGP | 11:27654893-28108308 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0005102 | IEA | receptor binding |
| GO:0005576 | IEA | extracellular region |
| GO:0005737 | ISS | cytoplasm |
| GO:0007399 | TAS | nervous system development |
| GO:0008083 | IEA | growth factor activity |
| GO:0048471 | ISS | perinuclear region of cytoplasm |
| GO:0051965 | IDA | positive regulation of synapse assembly |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000111049
|
Bdnf-004 | protein_coding | Mus_musculus | 0 | 2209 |
|
ENSMUST00000111046
|
Bdnf-005 | protein_coding | Mus_musculus | 0 | 2084 |
|
ENSMUST00000111042
|
Bdnf-010 | protein_coding | Mus_musculus | 0 | 2078 |
|
ENSMUST00000111044
|
Bdnf-008 | protein_coding | Mus_musculus | 0 | 2078 |
|
ENSMUST00000111045
|
Bdnf-007 | protein_coding | Mus_musculus | 0 | 2078 |
|
ENSMUST00000176893
|
Bdnf-011 | protein_coding | Mus_musculus | 0 | 2078 |
|
ENSMUST00000111050
|
Bdnf-006 | protein_coding | Mus_musculus | 0 | 2078 |
|
ENSMUST00000111051
|
Bdnf-002 | protein_coding | Mus_musculus | 0 | 2078 |
|
ENSMUST00000111047
|
Bdnf-003 | protein_coding | Mus_musculus | 0 | 2076 |
|
ENSMUST00000053317
|
Bdnf-001 | protein_coding | Mus_musculus | 0 | 2076 |
|
ENSMUST00000111043
|
Bdnf-009 | protein_coding | Mus_musculus | 0 | 2074 |
|
ENSDART00000131009
|
bdnf-005 | protein_coding | Danio_rerio | 0 | 479 |
|
ENSDART00000014843
|
bdnf-001 | protein_coding | Danio_rerio | 0 | 479 |
