C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: brain derived neurotrophic factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000111045 Bdnf-007 ENSMUSG00000048482 10090 + 2:109693563-109727007 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000111045
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000111045 0.184±0.07 0.056±0.02 2.450±1.08 0.472±0.07 0.859±0.26 0.295±0.14 0.740±0.17 1.124±0.14 0.166±0.17 5.700±0.77 0.132±0.00 0.829±0.42 0.094±0.01

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001657 IDA ureteric bud development
GO:0001662 IMP behavioral fear response
GO:0005515 IPI protein binding
GO:0005576 TAS extracellular region
GO:0005737 IDA cytoplasm
GO:0005788 TAS endoplasmic reticulum lumen
GO:0007214 IDA gamma-aminobutyric acid signaling pathway
GO:0007406 IDA negative regulation of neuroblast proliferation
GO:0007411 IMP axon guidance
GO:0007412 IMP axon target recognition
GO:0007611 IMP learning or memory
GO:0007623 IEP circadian rhythm
GO:0007631 IMP feeding behavior
GO:0008038 IMP neuron recognition
GO:0008083 IEA growth factor activity
GO:0014047 IPI glutamate secretion
GO:0016023 IDA cytoplasmic membrane-bounded vesicle
GO:0016358 IMP dendrite development
GO:0019222 IMP regulation of metabolic process
GO:0021675 IMP nerve development
GO:0032229 IDA negative regulation of synaptic transmission, GABAergic
GO:0033138 IDA positive regulation of peptidyl-serine phosphorylation
GO:0042490 IGI mechanoreceptor differentiation
GO:0042493 IMP response to drug
GO:0042596 IMP fear response
GO:0043066 IDA negative regulation of apoptotic process
GO:0043523 IDA regulation of neuron apoptotic process
GO:0043524 IMP negative regulation of neuron apoptotic process
GO:0045666 IDA positive regulation of neuron differentiation
GO:0046668 IDA regulation of retinal cell programmed cell death
GO:0048167 IDA regulation of synaptic plasticity
GO:0048471 IDA perinuclear region of cytoplasm
GO:0048675 IDA axon extension
GO:0048839 IMP inner ear development
GO:0060548 IMP negative regulation of cell death
GO:0061193 IMP taste bud development
GO:0097484 IDA dendrite extension

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000131009 bdnf-005 protein_coding Danio_rerio 0 470
ENSDART00000014843 bdnf-001 protein_coding Danio_rerio 0 470
ENST00000314915 BDNF-018 protein_coding Homo_sapiens 0 2076
ENST00000356660 BDNF-010 protein_coding Homo_sapiens 0 2178
ENST00000395978 BDNF-003 protein_coding Homo_sapiens 0 2076
ENST00000395980 BDNF-201 protein_coding Homo_sapiens 0 2078
ENST00000395981 BDNF-002 protein_coding Homo_sapiens 0 2078
ENST00000395983 BDNF-007 protein_coding Homo_sapiens 0 2078
ENST00000395986 BDNF-013 protein_coding Homo_sapiens 0 2076
ENST00000418212 BDNF-011 protein_coding Homo_sapiens 0 2078
ENST00000420794 BDNF-202 protein_coding Homo_sapiens 0 2080
ENST00000438929 BDNF-008 protein_coding Homo_sapiens 0 2078
ENST00000439476 BDNF-015 protein_coding Homo_sapiens 0 2078
ENST00000525528 BDNF-016 protein_coding Homo_sapiens 0 2078
ENST00000525950 BDNF-001 protein_coding Homo_sapiens 0 2078
ENST00000530786 BDNF-006 nonsense_mediated_decay Homo_sapiens 0 2080
ENST00000530861 BDNF-009 protein_coding Homo_sapiens 0 2080
ENST00000532997 BDNF-004 protein_coding Homo_sapiens 0 2078
ENST00000533131 BDNF-014 protein_coding Homo_sapiens 0 2078
ENST00000533246 BDNF-012 protein_coding Homo_sapiens 0 2087
ENST00000584049 BDNF-005 processed_transcript Homo_sapiens 0 2078

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