C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000528610 EEF1D-004 ENSG00000104529 9606 - 8:143579728-143597425 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastHeartKidneyLiverOvaryPlacentaTestisENST00000528610
Transcript ID Adrenal Breast Heart Kidney Liver Ovary Placenta Testis
ENST00000528610 134.276±0.00 55.689±20.54 24.786±12.30 43.331±0.00 38.658±0.00 240.539±82.18 82.726±0.00 88.499±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008C2 CIL_0008C2_0001 VISTA 8:143231340-143832399
CIL_0003C6 CIL_0003C6_0001 CGP 8:143574785-143599541

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003746 IEA translation elongation factor activity
GO:0004871 IMP signal transducer activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005853 IEA eukaryotic translation elongation factor 1 complex
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006412 TAS translation
GO:0006414 IEA:TAS translational elongation
GO:0007165 IMP signal transduction
GO:0008135 TAS translation factor activity, nucleic acid binding
GO:0010467 TAS gene expression
GO:0043123 IMP positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0044267 TAS cellular protein metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000109972 Eef1d-006 protein_coding Mus_musculus 0 896
ENSMUST00000121873 Gm11675-001 processed_pseudogene Mus_musculus 0 625
ENSMUST00000119777 Gm12848-001 processed_pseudogene Mus_musculus 0 580
ENSMUST00000055220 Eef1d-004 retained_intron Mus_musculus 0 195
ENSMUST00000141268 Eef1d-010 protein_coding Mus_musculus 0 195
ENSMUST00000154584 Eef1d-001 protein_coding Mus_musculus 0 195

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