C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphatidic acid phosphatase type 2 domain containing 1B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000528814 PPAPDC1B-004 ENSG00000147535 9606 - 8:38267001-38269230 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonKidneyLungOvaryPlacentaTestisENST00000528814
Transcript ID Bladder Brain Colon Kidney Lung Ovary Placenta Testis
ENST00000528814 0.699±0.00 1.170±0.43 1.753±0.00 6.115±0.00 0.603±0.00 5.625±3.47 1.800±0.00 1.500±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008NR CIL_0008NR_0001 VISTA 8:38140056-38746180
CIL_0003YZ CIL_0003YZ_0002 CGP 8:38225218-38275558
CIL_0008SM CIL_0008SM_0001 VISTA 8:38252496-38854674
CIL_0008H7 CIL_0008H7_0001 VISTA 8:38253282-38854976
CIL_0003Z2 CIL_0003Z2_0002 CGP 8:38263130-38382272

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000138879 Ppapdc1b-008 retained_intron Mus_musculus 0 259
ENSMUST00000139120 Ppapdc1b-006 retained_intron Mus_musculus 0 259
ENSMUST00000133117 Ppapdc1b-004 retained_intron Mus_musculus 0 259
ENSMUST00000145678 Ppapdc1b-003 nonsense_mediated_decay Mus_musculus 0 248
ENSMUST00000138548 Ppapdc1b-007 processed_transcript Mus_musculus 0 246
ENSMUST00000139836 Ppapdc1b-005 protein_coding Mus_musculus 0 246
ENSMUST00000124764 Ppapdc1b-002 nonsense_mediated_decay Mus_musculus 0 246
ENSMUST00000068916 Ppapdc1b-001 protein_coding Mus_musculus 0 246

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