C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: parvin, alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000528916 PARVA-004 ENSG00000197702 9606 + 11:12452735-12511533 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; MuscleOvaryPlacentaTestisENST00000528916
Transcript ID Muscle Ovary Placenta Testis
ENST00000528916 1.118±0.00 7.183±0.00 10.082±0.00 1.753±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008T3 CIL_0008T3_0001 VISTA 11:11882278-12483702
CIL_0008YS CIL_0008YS_0001 VISTA 11:11899653-12500760
CIL_0007SQ CIL_0007SQ_0001 VISTA 11:11959946-12561868
CIL_0003PF CIL_0003PF_0001 CGP 11:12276080-12530801
CIL_0003PG CIL_0003PG_0001 CGP 11:12377185-12944483

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005515 IEA protein binding
GO:0005737 IDA cytoplasm
GO:0005925 IDA focal adhesion
GO:0007155 IEA cell adhesion
GO:0015629 IDA actin cytoskeleton
GO:0031532 IEA actin cytoskeleton reorganization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000106640 Parva-004 protein_coding Mus_musculus 0 811
ENSMUST00000033030 Parva-001 protein_coding Mus_musculus 0 760
ENSMUST00000106643 Parva-002 protein_coding Mus_musculus 0 760
ENSDART00000011351 parvab-001 protein_coding Danio_rerio 0 492
ENSDART00000056847 parvab-201 protein_coding Danio_rerio 0 492
ENSMUST00000126047 Parva-006 processed_transcript Mus_musculus 3e-28 130

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