C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Usher syndrome 1C (autosomal recessive, severe)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000529563 USH1C-009 ENSG00000006611 9606 - 11:17493965-17516622 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonKidneyLungOvaryTestisENST00000529563
Transcript ID Brain Colon Kidney Lung Ovary Testis
ENST00000529563 23.374±0.00 5.833±0.00 13.129±0.00 0.128±0.00 0.205±0.00 1.178±0.75

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003ZZ CIL_0003ZZ_0001 CGP 11:17392885-17544416
CIL_0003ZY CIL_0003ZY_0001 CGP 11:17493895-17647150

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000176371 Ush1c-008 protein_coding Mus_musculus 0 462
ENSMUST00000177212 Ush1c-007 protein_coding Mus_musculus 0 462
ENSMUST00000078680 Ush1c-004 protein_coding Mus_musculus 0 462
ENSMUST00000154292 Ush1c-003 protein_coding Mus_musculus 0 436
ENSMUST00000009667 Ush1c-001 protein_coding Mus_musculus 0 436
ENSMUST00000143155 Ush1c-002 nonsense_mediated_decay Mus_musculus 0 436

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