C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polypeptide N-acetylgalactosaminyltransferase 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000529983 GALNT4-001 ENSG00000257594 9606 - 12:89519408-89524806 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000529983
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000529983 0.967±0.00 1.209±0.00 1.877±0.00 0.984±0.46 5.050±3.59 3.296±2.32 0.536±0.02 1.877±0.00 1.752±0.85 0.991±0.35 4.573±2.95 0.947±0.16 0.746±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000213 CIL_000213_0002 CGP 12:89347232-89526024
CIL_0002EZ CIL_0002EZ_0001 CGP 12:89419718-89526262

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0004653 IEA polypeptide N-acetylgalactosaminyltransferase activity
GO:0005794 IDA Golgi apparatus
GO:0005975 NAS carbohydrate metabolic process
GO:0016021 IEA integral component of membrane
GO:0016266 TAS O-glycan processing
GO:0030246 IEA carbohydrate binding
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process
GO:0046872 IEA metal ion binding
GO:0048471 IDA perinuclear region of cytoplasm
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000161240 Galnt4-001 protein_coding Mus_musculus 0 2002
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.0000006 62

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