C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear RNA export factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000530875 NXF1-003 ENSG00000162231 9606 - 11:62794338-62805469 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastKidneyLiverENST00000530875
Transcript ID Bladder Brain Breast Kidney Liver
ENST00000530875 1.547±0.00 1.908±0.92 1.781±0.00 1.480±0.00 1.609±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089X CIL_00089X_0001 VISTA 11:62298635-62900076

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003723 IEA RNA binding
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006406 IEA mRNA export from nucleus
GO:0006810 IEA transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000010241 Nxf1-001 protein_coding Mus_musculus 0 1886
ENSMUST00000184970 Nxf1-002 protein_coding Mus_musculus 0 1144
ENSMUST00000183939 Nxf1-003 protein_coding Mus_musculus 0 747
ENSMUST00000185056 Nxf1-006 retained_intron Mus_musculus 0 595
ENSMUST00000184756 Nxf1-011 nonsense_mediated_decay Mus_musculus 0 494
ENSMUST00000184663 Nxf1-004 protein_coding Mus_musculus 0 261

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