C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear RNA export factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000531709 NXF1-006 ENSG00000162231 9606 - 11:62792123-62805470 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000531709
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000531709 5.223±0.00 9.817±0.00 1.848±0.00 2.461±1.69 1.454±0.00 2.350±0.44 4.305±0.00 6.256±4.56 1.648±0.48 0.716±0.00 10.298±7.78 6.003±1.86 5.668±1.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089X CIL_00089X_0001 VISTA 11:62298635-62900076

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000346 IDA transcription export complex
GO:0003723 IEA RNA binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IEA cytoplasm
GO:0005829 TAS cytosol
GO:0006406 IEA:IDA mRNA export from nucleus
GO:0010467 TAS gene expression
GO:0016032 IEA viral process
GO:0016607 IDA nuclear speck
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000184970 Nxf1-002 protein_coding Mus_musculus 0 3738
ENSMUST00000010241 Nxf1-001 protein_coding Mus_musculus 0 1218
ENSMUST00000183939 Nxf1-003 protein_coding Mus_musculus 0 959
ENSMUST00000185056 Nxf1-006 retained_intron Mus_musculus 0 682
ENSMUST00000184756 Nxf1-011 nonsense_mediated_decay Mus_musculus 0 542
ENSMUST00000184826 Nxf1-010 protein_coding Mus_musculus 0 449
ENSMUST00000183898 Nxf1-008 processed_transcript Mus_musculus 0 346
ENSMUST00000184808 Nxf1-007 retained_intron Mus_musculus 0 289
ENSMUST00000184663 Nxf1-004 protein_coding Mus_musculus 6e-36 158

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