C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: proteasome (prosome, macropain) 26S subunit, non-ATPase, 13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000532097 PSMD13-001 ENSG00000185627 9606 + 11:236546-252956 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryTestisENST00000532097
Transcript ID Brain Ovary Testis
ENST00000532097 2.299±0.00 12.141±0.00 13.755±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006LA CIL_0006LA_0001 CGP 11:207511-236931
CIL_0006QN CIL_0006QN_0001 CGP 11:215458-252984

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000082 TAS G1/S transition of mitotic cell cycle
GO:0000209 TAS protein polyubiquitination
GO:0000278 TAS mitotic cell cycle
GO:0000502 IDA proteasome complex
GO:0002474 TAS antigen processing and presentation of peptide antigen via MHC class I
GO:0002479 TAS antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005829 TAS cytosol
GO:0006521 TAS regulation of cellular amino acid metabolic process
GO:0006915 TAS apoptotic process
GO:0006977 TAS DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0022624 ISS proteasome accessory complex
GO:0031145 TAS anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process
GO:0034641 TAS cellular nitrogen compound metabolic process
GO:0042590 TAS antigen processing and presentation of exogenous peptide antigen via MHC class I
GO:0042981 TAS regulation of apoptotic process
GO:0043066 TAS negative regulation of apoptotic process
GO:0044281 TAS small molecule metabolic process
GO:0051436 TAS negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0051437 TAS positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0051439 TAS regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000026560 Psmd13-001 protein_coding Mus_musculus 0 1509
ENSMUST00000166889 Psmd13-010 nonsense_mediated_decay Mus_musculus 0 1197
ENSMUST00000151644 Psmd13-002 retained_intron Mus_musculus 0 1194
ENSMUST00000163610 Psmd13-011 protein_coding Mus_musculus 0 1075
ENSMUST00000129683 Psmd13-005 processed_transcript Mus_musculus 0 765
ENSMUST00000164681 Psmd13-013 protein_coding Mus_musculus 0 761
ENSMUST00000130462 Psmd13-009 protein_coding Mus_musculus 0 680
ENSMUST00000140411 Psmd13-003 processed_transcript Mus_musculus 0 516
ENSMUST00000124736 Psmd13-004 processed_transcript Mus_musculus 0 422
ENSMUST00000125668 Psmd13-008 retained_intron Mus_musculus 0 326
ENSMUST00000146875 Psmd13-006 retained_intron Mus_musculus 0 278
ENSMUST00000165539 Psmd13-012 protein_coding Mus_musculus 0 226
ENSMUST00000153385 Psmd13-007 processed_transcript Mus_musculus 5.99756e-43 180

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