C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rho guanine nucleotide exchange factor (GEF) 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000532720 ARHGEF4-012 ENSG00000136002 9606 + 2:131041277-131045558 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalHeartKidneyMusclePlacentaENST00000532720
Transcript ID Adrenal Heart Kidney Muscle Placenta
ENST00000532720 0.847±0.00 0.074±0.00 0.377±0.00 0.829±0.00 0.305±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001J9 CIL_0001J9_0001 CGP 2:130755435-131047263
CIL_0001J8 CIL_0001J8_0001 CGP 2:130836916-131093460

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005089 IEA Rho guanyl-nucleotide exchange factor activity
GO:0035023 IEA regulation of Rho protein signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000047664 Arhgef4-001 protein_coding Mus_musculus 0 1027
ENSMUST00000162599 Arhgef4-005 protein_coding Mus_musculus 0 1027
ENSMUST00000159747 Arhgef4-004 protein_coding Mus_musculus 0 1027
ENSMUST00000160855 Arhgef4-003 nonsense_mediated_decay Mus_musculus 0 468
ENSMUST00000162760 Arhgef4-002 retained_intron Mus_musculus 0 278

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