C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group AT-hook 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000536545 HMGA2-003 ENSG00000149948 9606 + 12:65824460-65915447 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainHeartLiverTestisENST00000536545
Transcript ID Adrenal Brain Heart Liver Testis
ENST00000536545 0.132±0.00 0.186±0.00 0.038±0.00 0.024±0.00 0.748±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00088X CIL_00088X_0001 VISTA 12:65441147-66043028

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000228 IEA nuclear chromosome
GO:0000785 IEA chromatin
GO:0001077 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007165 IEA signal transduction
GO:0007283 IEA spermatogenesis
GO:0008283 IEA cell proliferation
GO:0008284 IEA positive regulation of cell proliferation
GO:0008584 IEA male gonad development
GO:0010564 IEA regulation of cell cycle process
GO:0010628 IEA positive regulation of gene expression
GO:0019899 IEA enzyme binding
GO:0021846 IEA cell proliferation in forebrain
GO:0021983 IEA pituitary gland development
GO:0030325 IEA adrenal gland development
GO:0033144 IEA negative regulation of intracellular steroid hormone receptor signaling pathway
GO:0035019 IEA somatic stem cell maintenance
GO:0040018 IEA positive regulation of multicellular organism growth
GO:0046426 IEA negative regulation of JAK-STAT cascade
GO:0048712 IEA negative regulation of astrocyte differentiation
GO:0051091 IEA positive regulation of sequence-specific DNA binding transcription factor activity
GO:0060123 IEA regulation of growth hormone secretion
GO:0060612 IEA adipose tissue development
GO:0060613 IEA fat pad development
GO:0090276 IEA regulation of peptide hormone secretion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000159699 Hmga2-002 protein_coding Mus_musculus 0 544
ENSMUST00000072777 Hmga2-001 protein_coding Mus_musculus 0 544
ENSMUST00000159310 Hmga2-003 retained_intron Mus_musculus 0 407

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