C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: regulatory factor X, 4 (influences HLA class II expression)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000536688 RFX4-006 ENSG00000111783 9606 + 12:106601172-106733506 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastHeartKidneyLiverOvaryENST00000536688
Transcript ID Adrenal Breast Heart Kidney Liver Ovary
ENST00000536688 0.128±0.00 0.015±0.00 0.013±0.00 0.037±0.00 0.039±0.00 0.015±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00028K CIL_00028K_0001 CGP 12:106357658-106762803
CIL_0007NZ CIL_0007NZ_0001 UCNEbase 12:106418267-106672625
CIL_0001MF CIL_0001MF_0001 CGP 12:106582907-106889316

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000060397 Rfx4-003 protein_coding Mus_musculus 0 2067
ENSMUST00000166696 Rfx4-006 protein_coding Mus_musculus 0 1694
ENSMUST00000095388 Rfx4-002 protein_coding Mus_musculus 0 1585
ENSMUST00000020226 Rfx4-001 processed_transcript Mus_musculus 0 1236
ENSDART00000031752 rfx4-001 protein_coding Danio_rerio 0 1155
ENSMUST00000173479 Rfx4-004 processed_transcript Mus_musculus 0 259
ENSMUST00000165868 Rfx4-005 processed_transcript Mus_musculus 0 257

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