C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: paxillin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000536957 PXN-004 ENSG00000089159 9606 - 12:120210448-120226844 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastHeartLungENST00000536957
Transcript ID Adipose Breast Heart Lung
ENST00000536957 15.193±0.00 0.945±0.00 2.383±0.00 6.011±5.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009CQ CIL_0009CQ_0001 VISTA 12:119991644-120595694

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005925 IDA focal adhesion
GO:0007160 IEA cell-matrix adhesion
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000086523 Pxn-002 protein_coding Mus_musculus 0 2163
ENSMUST00000125007 Pxn-004 processed_transcript Mus_musculus 0 1162
ENSMUST00000152156 Pxn-005 retained_intron Mus_musculus 0 1162
ENSMUST00000067268 Pxn-001 protein_coding Mus_musculus 0 1162
ENSMUST00000137716 Pxn-007 processed_transcript Mus_musculus 0 828
ENSMUST00000157050 Pxn-008 processed_transcript Mus_musculus 0 773
ENSDART00000123180 pxna-201 protein_coding Danio_rerio 0 684
ENSDART00000126598 pxna-202 protein_coding Danio_rerio 0 678
ENSDART00000085993 PXN (1 of 3)-201 protein_coding Danio_rerio 0 660
ENSMUST00000125054 Pxn-003 retained_intron Mus_musculus 0 651
ENSMUST00000153682 Pxn-009 processed_transcript Mus_musculus 0 416
ENSMUST00000138139 Pxn-012 retained_intron Mus_musculus 0 364
ENSMUST00000134198 Pxn-013 processed_transcript Mus_musculus 0 339
ENSMUST00000127345 Pxn-010 processed_transcript Mus_musculus 0 292
ENSMUST00000129897 Pxn-006 processed_transcript Mus_musculus 0 283

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