C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002ZH_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000158104-ENSG00000110801 CGP 9606 12:121839527-121918297
GeneTranscriptPositionBiotype
ENSG00000110801 (PSMD9)
proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 		ENST00000261817 (PSMD9-001) 121888771-121917863 protein_coding
ENST00000361485 (PSMD9-010) 121914218-121916643 retained_intron
ENST00000535293 (PSMD9-009) 121893817-121916584 nonsense_mediated_decay
ENST00000537407 (PSMD9-002) 121888732-121916644 nonsense_mediated_decay
ENST00000538613 (PSMD9-005) 121888784-121899853 protein_coding
ENST00000540962 (PSMD9-006) 121888762-121916549 nonsense_mediated_decay
ENST00000541212 (PSMD9-003) 121888731-121918297 protein_coding
ENST00000542602 (PSMD9-011) 121888786-121916399 protein_coding
ENST00000543699 (PSMD9-004) 121888845-121916584 nonsense_mediated_decay
ENST00000544254 (PSMD9-007) 121902048-121916615 retained_intron
ENST00000544724 (PSMD9-008) 121897271-121916568 retained_intron
ENSG00000158023 (WDR66)
WD repeat domain 66 		ENST00000288912 (WDR66-001) 121917862-122003927 protein_coding
ENST00000397454 (WDR66-003) 121918592-121972069 protein_coding
ENST00000428465 (WDR66-010) 121996886-122003807 retained_intron
ENST00000535257 (WDR66-007) 121952695-121959739 retained_intron
ENST00000540779 (WDR66-002) 121921408-121933655 retained_intron
ENST00000543211 (WDR66-006) 121947669-121959089 retained_intron
ENST00000545752 (WDR66-008) 121961994-121969966 processed_transcript
ENST00000545988 (WDR66-009) 122001704-122003927 processed_transcript
ENST00000546044 (WDR66-005) 121934250-121949211 retained_intron
ENSG00000158104 (HPD)
4-hydroxyphenylpyruvate dioxygenase 		ENST00000289004 (HPD-002) 121839527-121858859 protein_coding
ENST00000535114 (HPD-003) 121856598-121858855 retained_intron
ENST00000542159 (HPD-004) 121848990-121857583 retained_intron
ENST00000543163 (HPD-001) 121839530-121863596 protein_coding
ENST00000543869 (HPD-005) 121846862-121849791 processed_transcript
ENSG00000239082 (RNU7-170P)
RNA, U7 small nuclear 170 pseudogene 		ENST00000459303 (RNU7-170P-201) 121908103-121908163 snRNA
ENSG00000256811 (RP11-7M8.2)
 ENST00000543848 (RP11-7M8.2-001) 121856259-121857059 antisense
ENSG00000278084 (RP11-87C12.6)
 ENST00000618674 (RP11-87C12.6-001) 121874193-121874337 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0002ZH_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029445-ENSMUSG00000029440 CGP 10090 5:123171807-123250131
GeneTranscriptPositionBiotype
ENSMUSG00000029440 (Psmd9)
proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 		ENSMUST00000100729 (Psmd9-001) 123228190-123250131 protein_coding
ENSMUST00000133386 (Psmd9-002) 123228190-123245268 processed_transcript
ENSMUSG00000029445 (Hpd)
4-hydroxyphenylpyruvic acid dioxygenase 		ENSMUST00000031398 (Hpd-001) 123171807-123182725 protein_coding
ENSMUST00000124110 (Hpd-004) 123180659-123182067 processed_transcript
ENSMUST00000144679 (Hpd-005) 123172101-123175915 protein_coding
ENSMUST00000154713 (Hpd-002) 123177529-123182723 protein_coding
ENSMUST00000155092 (Hpd-006) 123171872-123172911 processed_transcript
ENSMUST00000156539 (Hpd-003) 123177529-123182722 retained_intron
ENSMUSG00000097213 (Gm26745)
predicted gene, 26745 		ENSMUST00000181022 (Gm26745-201) 123047373-123230871 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002ZH_0001ENSG00000110801ENST00000261817ENST00000361485ENST00000535293ENST00000537407ENST00000538613ENST00000540962ENST00000541212ENST00000542602ENST00000543699ENST00000544254ENST00000544724ENSG00000158023ENST00000288912ENST00000397454ENST00000428465ENST00000535257ENST00000540779ENST00000543211ENST00000545752ENST00000545988ENST00000546044ENSG00000158104ENST00000289004ENST00000535114ENST00000542159ENST00000543163ENST00000543869ENSG00000239082ENST00000459303ENSG00000256811ENST00000543848ENSG00000278084ENST00000618674CIL_0002ZH_0002ENSMUSG00000029440ENSMUST00000100729ENSMUST00000133386ENSMUSG00000029445ENSMUST00000031398ENSMUST00000124110ENSMUST00000144679ENSMUST00000154713ENSMUST00000155092ENSMUST00000156539ENSMUSG00000097213ENSMUST00000181022
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002ZH_0001ENSG00000110801ENST00000261817ENST00000361485ENST00000537407ENST00000538613ENST00000540962ENST00000542602ENST00000543699ENST00000544254ENSG00000158023ENST00000288912ENST00000397454ENST00000535257ENST00000540779ENST00000545752ENST00000546044ENSG00000158104ENST00000289004ENST00000542159ENST00000543163ENST00000543869ENSG00000239082ENST00000459303ENSG00000256811ENST00000543848ENSG00000278084ENST00000618674CIL_0002ZH_0002ENSMUSG00000029440ENSMUST00000100729ENSMUST00000133386ENSMUSG00000029445ENSMUST00000031398ENSMUST00000124110ENSMUST00000144679ENSMUST00000154713ENSMUST00000155092ENSMUST00000156539ENSMUSG00000097213ENSMUST00000181022
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000110801 ENST00000261817 N/A N/A 1.529±0.00 4.120±0.00 3.133±0.00 N/A N/A N/A N/A N/A N/A 3.788±0.97 2.161±0.00 N/A
ENST00000361485 N/A N/A N/A N/A N/A 0.894±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000535293 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000537407 7.615±0.00 22.007±0.00 N/A 2.327±0.00 12.082±0.00 7.079±3.38 5.478±4.70 17.762±12.46 6.522±2.87 9.173±0.00 2.215±0.30 25.548±20.44 20.200±7.65 25.712±0.00
ENST00000538613 14.316±0.00 N/A N/A N/A 24.528±0.00 N/A 1.502±0.00 N/A N/A N/A 11.166±0.00 N/A N/A N/A
ENST00000540962 N/A N/A N/A N/A N/A N/A 9.157±0.00 N/A N/A N/A 6.467±0.00 6.405±0.00 N/A N/A
ENST00000541212 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000542602 9.591±0.00 N/A N/A 5.017±0.00 N/A N/A N/A N/A 4.061±0.00 N/A 5.294±0.00 N/A N/A N/A
ENST00000543699 8.156±0.00 17.623±0.00 N/A 12.392±0.00 6.389±4.24 16.139±0.00 0.582±0.00 26.473±0.00 13.499±0.00 6.657±4.46 4.364±0.00 16.096±1.00 11.968±3.40 N/A
ENST00000544254 N/A N/A N/A N/A N/A N/A 0.408±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000544724 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000158023 ENST00000288912 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.281±0.00 N/A 3.303±0.00 N/A 13.647±1.55
ENST00000397454 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.355±0.00 N/A N/A N/A 6.009±0.00
ENST00000428465 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000535257 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.255±0.00 N/A N/A N/A
ENST00000540779 N/A N/A 0.605±0.00 N/A N/A N/A N/A N/A N/A 0.769±0.00 N/A N/A N/A N/A
ENST00000543211 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000545752 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 43.979±0.00
ENST00000545988 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000546044 N/A N/A N/A N/A N/A N/A N/A 5.501±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000158104 ENST00000289004 0.021±0.00 1.371±0.00 35.589±0.00 0.736±0.58 1.437±0.56 0.624±0.00 0.103±0.00 241.574±179.18 367.023±366.67 0.323±0.00 0.424±0.00 1.404±1.64 0.810±0.61 3.409±0.23
ENST00000535114 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000542159 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.448±0.00 N/A N/A N/A N/A
ENST00000543163 N/A 0.356±0.00 N/A N/A 0.528±0.00 N/A N/A N/A N/A 0.328±0.00 N/A N/A 0.134±0.00 1.489±0.00
ENST00000543869 0.139±0.00 N/A N/A N/A N/A 0.427±0.00 0.480±0.00 N/A N/A N/A N/A 0.099±0.00 N/A N/A
ENSG00000239082 ENST00000459303 N/A 3.024±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 107.939±0.00 N/A N/A
ENSG00000256811 ENST00000543848 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.185±0.00 N/A N/A
ENSG00000278084 ENST00000618674 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.096±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029440 ENSMUST00000100729 6.108±1.32 5.313±1.19 4.778±0.29 7.112±1.15 4.855±0.93 5.330±0.94 4.656±0.30 10.638±0.27 9.679±3.93 6.701±0.33 5.914±1.10 8.872±2.82 8.883±4.25 9.918±2.39
ENSMUST00000133386 1.239±0.00 1.374±0.49 N/A 1.478±0.00 1.123±0.35 1.704±0.49 N/A N/A 1.309±0.00 1.039±0.06 N/A 2.022±0.36 N/A 1.289±0.00
ENSMUSG00000029445 ENSMUST00000031398 0.401±0.20 0.173±0.11 0.066±0.03 N/A 2.093±1.87 42.328±3.21 0.237±0.15 144.618±2.78 977.286±885.18 0.481±0.12 0.112±0.07 0.786±0.64 0.705±0.18 0.175±0.02
ENSMUST00000124110 N/A 0.601±0.16 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.317±0.00 N/A
ENSMUST00000144679 N/A N/A 0.119±0.00 N/A N/A N/A N/A N/A N/A 0.522±0.00 N/A 1.185±0.99 0.673±0.00 N/A
ENSMUST00000154713 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.137±0.00 0.096±0.00
ENSMUST00000155092 0.182±0.00 0.355±0.24 N/A N/A N/A N/A 0.062±0.01 N/A N/A 0.295±0.00 N/A 0.826±0.20 0.389±0.00 0.859±0.08
ENSMUST00000156539 N/A 0.181±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.089±0.00 N/A
ENSMUSG00000097213 ENSMUST00000181022 0.134±0.05 0.296±0.09 0.163±0.07 0.198±0.07 0.205±0.08 0.300±0.14 0.047±0.01 0.192±0.08 0.171±0.09 0.265±0.10 0.017±0.00 0.340±0.22 0.128±0.06 0.125±0.03

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