C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cadherin 13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000539548 CDH13-006 ENSG00000140945 9606 + 16:82626970-83795173 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartMuscleENST00000539548
Transcript ID Bladder Brain Breast Colon Heart Muscle
ENST00000539548 0.936±0.00 5.119±0.00 0.777±0.00 0.322±0.00 5.642±0.00 1.910±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003NV CIL_0003NV_0001 CGP 16:82147798-83800640
CIL_0008L6 CIL_0008L6_0001 VISTA 16:82434004-83036442
CIL_0005JS CIL_0005JS_0001 CGP 16:82626803-83819737

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000117160 Cdh13-001 protein_coding Mus_musculus 0 2167
ENSMUST00000148836 Cdh13-006 retained_intron Mus_musculus 0 970
ENSMUST00000151842 Cdh13-007 processed_transcript Mus_musculus 0 564
ENSMUST00000142551 Cdh13-005 retained_intron Mus_musculus 0 525
ENSMUST00000145849 Cdh13-003 retained_intron Mus_musculus 0 344
ENSMUST00000129548 Cdh13-004 retained_intron Mus_musculus 1e-35 156
ENSMUST00000123567 Cdh13-002 processed_transcript Mus_musculus 4e-35 154

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