C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calcium channel, voltage-dependent, beta 4 subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000539935 CACNB4-001 ENSG00000182389 9606 - 2:151832776-152099079 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastKidneyLiverOvaryPlacentaTestisENST00000539935
Transcript ID Adipose Brain Breast Kidney Liver Ovary Placenta Testis
ENST00000539935 0.026±0.00 3.611±1.49 0.089±0.00 0.608±0.00 0.007±0.00 0.047±0.00 0.030±0.00 0.381±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007E4 CIL_0007E4_0001 CGP 2:151788984-152099079
CIL_0007E3 CIL_0007E3_0001 CGP 2:151832776-152175992

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005245 IDA:IEA voltage-gated calcium channel activity
GO:0005515 IPI:IEA protein binding
GO:0005829 TAS cytosol
GO:0005886 IDA plasma membrane
GO:0005891 IDA:IEA voltage-gated calcium channel complex
GO:0006810 TAS transport
GO:0006816 IEA calcium ion transport
GO:0006874 IEA cellular calcium ion homeostasis
GO:0007214 IEA gamma-aminobutyric acid signaling pathway
GO:0007268 TAS synaptic transmission
GO:0007411 TAS axon guidance
GO:0007528 IEA neuromuscular junction development
GO:0007628 IEA adult walking behavior
GO:0008331 IDA high voltage-gated calcium channel activity
GO:0009898 TAS cytoplasmic side of plasma membrane
GO:0014051 IEA gamma-aminobutyric acid secretion
GO:0019227 IEA neuronal action potential propagation
GO:0019901 IEA protein kinase binding
GO:0035249 IEA synaptic transmission, glutamatergic
GO:0042391 IEA regulation of membrane potential
GO:0045202 IDA synapse
GO:0046058 IEA cAMP metabolic process
GO:0048536 IEA spleen development
GO:0048538 IEA thymus development
GO:0048541 IEA Peyer's patch development
GO:0048747 IEA muscle fiber development
GO:0050852 IEA T cell receptor signaling pathway
GO:0050877 IEA neurological system process
GO:0050908 IEA detection of light stimulus involved in visual perception
GO:0051899 TAS membrane depolarization
GO:0070588 IEA calcium ion transmembrane transport
GO:1901385 IMP regulation of voltage-gated calcium channel activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000078324 Cacnb4-002 protein_coding Mus_musculus 0 2876
ENSMUST00000178799 Cacnb4-201 protein_coding Mus_musculus 0 2809
ENSMUST00000102761 Cacnb4-003 protein_coding Mus_musculus 0 2636
ENSMUST00000102760 Cacnb4-001 protein_coding Mus_musculus 0 2636

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