C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calcium channel, voltage-dependent, beta 4 subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000102760 Cacnb4-001 ENSMUSG00000017412 10090 - 2:52428325-52558560 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000102760
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000102760 0.198±0.17 0.106±0.04 0.124±0.00 2.745±0.44 0.220±0.11 0.124±0.01 0.077±0.04 0.182±0.00 0.169±0.05 0.198±0.00 0.094±0.02 0.059±0.04 0.135±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007E4 CIL_0007E4_0002 CGP 2:52397951-52676831
CIL_0007E3 CIL_0007E3_0002 CGP 2:52428320-52742281

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005245 IMP voltage-gated calcium channel activity
GO:0005515 IPI protein binding
GO:0005886 TAS plasma membrane
GO:0005891 IDA voltage-gated calcium channel complex
GO:0006816 IMP calcium ion transport
GO:0006874 IMP cellular calcium ion homeostasis
GO:0007214 IMP gamma-aminobutyric acid signaling pathway
GO:0007528 IMP neuromuscular junction development
GO:0007628 IMP adult walking behavior
GO:0008331 TAS high voltage-gated calcium channel activity
GO:0014051 IMP gamma-aminobutyric acid secretion
GO:0019227 IMP neuronal action potential propagation
GO:0035249 IMP synaptic transmission, glutamatergic
GO:0042391 IMP regulation of membrane potential
GO:0046058 IMP cAMP metabolic process
GO:0048536 IMP spleen development
GO:0048538 IMP thymus development
GO:0048541 IMP Peyer's patch development
GO:0048747 IMP muscle fiber development
GO:0050852 IMP T cell receptor signaling pathway
GO:0050877 IMP neurological system process
GO:0050908 IMP detection of light stimulus involved in visual perception
GO:0070588 IEA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000089577 cacnb4b-004 protein_coding Danio_rerio 0 558
ENSDART00000149177 cacnb4b-005 nonsense_mediated_decay Danio_rerio 0 281
ENST00000201943 CACNB4-004 protein_coding Homo_sapiens 0 1256
ENST00000360283 CACNB4-201 protein_coding Homo_sapiens 0 1110
ENST00000397327 CACNB4-002 protein_coding Homo_sapiens 0 2287
ENST00000427385 CACNB4-005 protein_coding Homo_sapiens 0 2078
ENST00000434468 CACNB4-009 protein_coding Homo_sapiens 0 416
ENST00000439467 CACNB4-006 protein_coding Homo_sapiens 0 2294
ENST00000470066 CACNB4-007 retained_intron Homo_sapiens 0 778
ENST00000475848 CACNB4-008 processed_transcript Homo_sapiens 0 329
ENST00000534999 CACNB4-003 protein_coding Homo_sapiens 0 2601
ENST00000539935 CACNB4-001 protein_coding Homo_sapiens 0 2636

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