C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group AT-hook 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000541363 HMGA2-011 ENSG00000149948 9606 + 12:65824898-65958854 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonHeartLungENST00000541363
Transcript ID Adrenal Breast Colon Heart Lung
ENST00000541363 0.026±0.00 0.013±0.00 0.358±0.00 0.009±0.00 0.008±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00088X CIL_00088X_0001 VISTA 12:65441147-66043028

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000785 IEA chromatin
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000159699 Hmga2-002 protein_coding Mus_musculus 0 601
ENSMUST00000072777 Hmga2-001 protein_coding Mus_musculus 0 601
ENSMUST00000159310 Hmga2-003 retained_intron Mus_musculus 0 407

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