C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PDZ and LIM domain 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000542407 PDLIM5-204 ENSG00000163110 9606 + 4:94451857-94668227 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainKidneyLiverOvaryPlacentaTestisENST00000542407
Transcript ID Brain Kidney Liver Ovary Placenta Testis
ENST00000542407 3.818±0.00 8.021±0.00 6.976±0.00 6.735±0.00 5.776±0.00 3.355±0.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00091X CIL_00091X_0001 VISTA 4:94368294-94970308
CIL_0001S9 CIL_0001S9_0002 CGP 4:94451857-95158448

Gene Ontology

GO IDEvidence TypeGO Description
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029941 Pdlim5-201 protein_coding Mus_musculus 0 1796
ENSMUST00000168967 Pdlim5-204 protein_coding Mus_musculus 0 848
ENSMUST00000058626 Pdlim5-202 protein_coding Mus_musculus 0 257
ENSMUST00000170361 Pdlim5-205 protein_coding Mus_musculus 0 257
ENSMUST00000090134 Pdlim5-203 protein_coding Mus_musculus 0 257

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