C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: YTH domain family, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000542507 YTHDF2-201 ENSG00000198492 9606 + 1:28736621-28769774 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderColonLiverMuscleOvaryPlacentaENST00000542507
Transcript ID Bladder Colon Liver Muscle Ovary Placenta
ENST00000542507 2.571±0.00 2.241±0.00 2.989±0.00 1.672±0.00 7.009±1.97 5.695±3.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099N CIL_00099N_0001 VISTA 1:28583201-29186892

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000932 IDA cytoplasmic mRNA processing body
GO:0006959 TAS humoral immune response
GO:0043488 IMP regulation of mRNA stability
GO:0044822 IDA poly(A) RNA binding
GO:1990247 IDA N6-methyladenosine-containing RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000152796 Ythdf2-001 protein_coding Mus_musculus 0 3916
ENSMUST00000102570 Ythdf2-002 retained_intron Mus_musculus 0 2981
ENSMUST00000120791 Gm6823-001 processed_pseudogene Mus_musculus 0 2555
ENSMUST00000120248 Gm8401-001 processed_pseudogene Mus_musculus 0 2540
ENSMUST00000085181 Ythdf2-003 protein_coding Mus_musculus 0 756
ENSMUST00000165072 Ythdf2-004 protein_coding Mus_musculus 0 405
ENSDART00000025171 ythdf1-001 protein_coding Danio_rerio 0 385

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