C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ADAMTS-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000542621 ADAMTSL1-008 ENSG00000178031 9606 + 9:18826138-18910294 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainHeartKidneyLiverMuscleTestisENST00000542621
Transcript ID Adrenal Brain Heart Kidney Liver Muscle Testis
ENST00000542621 0.934±0.00 0.162±0.01 0.194±0.00 0.615±0.00 0.449±0.25 0.094±0.00 0.850±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00013Y CIL_00013Y_0001 CGP 9:17579082-18910950
CIL_0007DA CIL_0007DA_0001 CGP 9:18473894-19049354

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005578 IEA proteinaceous extracellular matrix
GO:0006508 IEA proteolysis
GO:0008237 IEA metallopeptidase activity
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000107178 Adamtsl1-201 protein_coding Mus_musculus 0 704
ENSMUST00000107177 Adamtsl1-005 retained_intron Mus_musculus 0 704
ENSMUST00000141889 Adamtsl1-001 protein_coding Mus_musculus 0 704

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